Pipelines

Python scripts that turn imaging data into imaging biomarkers. Since imaging pipelines are complex and may take a long time to run, they are often split into smaller stages producing intermediate checkpoints.

Data cleaning

3D Dixon MRI data cleaning

Pipeline for harmonization of the 3D Dixon data in the iBEAt study

Repository Archive Input data (private) Output data (private)

Model training

Fat-water mapping from 3D Dixon-MRI

Pipeline for training the deep-learning model

Repository Archive Input data (private) Model weights

Modelling

Drug-mediated liver transporter inhibition

MRI kinetic analysis (human assay)

Repository Archive Notebook Input Data Output Data

Drug-mediated liver transporter inhibition

MRI kinetic analysis (rat assay)

Repository Archive Input Data Output Data

Analysis

Drug-mediated liver transporter inhibition

Data analysis of the first-in-human study

Repository Archive Notebook Input Data Input Data Preprint

Drug-mediated liver transporter inhibition

Data analysis of TRISTAN rat studies

Repository Archive Input Data Paper Paper Abstract