Pipelines

Python scripts that turn imaging data into imaging biomarkers. Since imaging pipelines are complex and may take a long time to run, they are often split into smaller stages producing intermediate checkpoints.

BEAt-DKD project

3D Dixon MRI data cleaning

Pipeline for harmonization of the 3D Dixon data in the iBEAt study

Repository Archive Input data (private) Output data (private)

Fat-water mapping from 3D Dixon-MRI

Pipeline for training the deep-learning model

Repository Archive Input data (private) Model weights

Organ shape features from 3D Dixon-MRI

Deriving, editing, visualising and measuring 3D organ shapes

Repository Input data (private)

TRISTAN project

Drug-mediated liver transporter inhibition

MRI kinetic analysis (human assay)

Repository Archive Notebook Input Data Output Data

Drug-mediated liver transporter inhibition

MRI kinetic analysis (rat assay)

Repository Archive Input Data Output Data

Drug-mediated liver transporter inhibition

Data analysis of the first-in-human study

Repository Archive Notebook Input Data Input Data Preprint

Drug-mediated liver transporter inhibition

Data analysis of TRISTAN rat studies

Repository Archive Input Data Paper Paper Abstract